Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs117161945 | chr16:2956664 | G/C | 1.35E-5 | 500 | 37.03 | 38.93 | 9.37 | KM Plot |
KIRC | rs11716371 | chr3:48362750 | C/T | 2.88E-5 | 502 | 37.47 | 38.83 | 22.42 | KM Plot |
KIRC | rs11716848 | chr3:48378500 | G/A | 7.57E-6 | 490 | 37.53 | 39.03 | 21.73 | KM Plot |
KIRC | rs11717716 | chr3:48375740 | T/C | 7.57E-6 | 490 | 37.53 | 39.03 | 21.73 | KM Plot |
KIRC | rs11718350 | chr3:48360992 | T/G | 6.76E-6 | 507 | 37.5 | 37.77 | 19.13 | KM Plot |
KIRC | rs11719365 | chr3:48280492 | C/T | 1.74E-5 | 501 | 37.7 | 37.6 | 19.13 | KM Plot |
KIRC | rs11720026 | chr3:48377921 | T/C | 1.19E-5 | 488 | 37.5 | 38.83 | 21.73 | KM Plot |
KIRC | rs11725989 | chr4:169144983 | A/T | 1.88E-8 | 509 | 37.03 | 40.1 | 3.1 | KM Plot |
KIRC | rs117269825 | chr11:34791095 | C/A | 9.88E-8 | 503 | 37.6 | 33.35 | 3.3 | KM Plot |
KIRC | rs11732233 | chr4:169169877 | C/T | 2.18E-8 | 508 | 37.35 | 37.67 | 3.1 | KM Plot |
KIRC | rs117442381 | chr21:47715208 | C/T | 5.64E-5 | 492 | 37.37 | 36.72 | 6.87 | KM Plot |
KIRC | rs117443865 | chr21:47959731 | C/G | 1.89E-5 | 506 | 37.47 | 39.87 | 6.87 | KM Plot |
KIRC | rs117454726 | chr11:34919068 | G/C | 5.09E-13 | 506 | 37.6 | 31.87 | 3.48 | KM Plot |
KIRC | rs117575534 | chr19:56148963 | T/G | 2.36E-7 | 491 | 37.77 | 35.43 | 6.02 | KM Plot |
KIRC | rs117678150 | chr15:24440451 | A/C | 2.07E-8 | 501 | 37.67 | 33.7 | 3.3 | KM Plot |